Clean Eating Breakfast Casseroles

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These clean eating breakfast casseroles are delicious & healthy! Plus, many of them are super easy to make.

This collection of healthy recipes are perfect for when you’re when you’re looking for something new to make. Or feeling like you’re falling into a breakfast rut.

maple overnight oats with fresh berries on top

Clean Eating Breakfast Casseroles

I’ve put together this roundup of breakfast casseroles with a variety of food bloggers as a way to find new healthy breakfast inspiration.

Breakfast can be tricky especially when you’re busy raising a family. It can be easy to fall into a rut of the same old routine. But I wanted to provide a fresh take with this collection of clean eating breakfasts.

Bonus – they are good for you too!

You’ll find 45 delicious recipes here for the entire family!

Easy Maple Overnight Oats
This recipe for easy maple overnight oats are naturally sweetened with maple syrup, this breakfast will help you get your day off to a sweet start!
Check out this recipe
Easy Maple Overnight Oats
Keto Broccoli Casserole (5 Ingredients)
This 5-ingredient keto broccoli casserole is easy to make, flavorful, and delicious. It’s loaded with cheese and has some green veggies. Thus, it makes for a great healthy vegetarian dish that your family will enjoy.
Check out this recipe
Keto Broccoli Casserole (5 Ingredients)
Cheesy Spinach and Mushroom Breakfast Casserole
Cheesy spinach and mushroom breakfast casserole is easy to make, gluten free, meatless, and delicious for breakfast or brunch! This cheesy spinach and mushroom breakfast casserole has been making an appearance at our house for breakfast and brunch for nearly 30 years.
Check out this recipe
Cheesy Spinach and Mushroom Breakfast Casserole
Onion, Cheddar & Kale Quiche
This kale quiche recipe is really delicious and simple to make. Plus, it makes a great way to sneak in fresh greens!
Check out this recipe
Onion, Cheddar & Kale Quiche
Instant Pot Shakshuka (Eggs with Spicy Tomato Sauce)
Want to diversify your breakfast? You have come to the right place! Shakshuka is an Israeli dish which includes eggs, tomatoes, bell peppers and some more healthy ingredients. It’s the perfect dish for the whole family! This pressure cooker shakshuka (Eggs with tomato sauce) is vegetarian, very healthy and super easy to make.
Check out this recipe
Instant Pot Shakshuka (Eggs with Spicy Tomato Sauce)
Vegan Healthy Quinoa Breakfast Bake
Healthy Quinoa Breakfast Bake. Easy plant-based breakfast. Low in calories, high in nutrition, absolutely delicious and perfect for meal prep.
Check out this recipe
Vegan Healthy Quinoa Breakfast Bake
PB&J French Toast Casserole
In PB&J French Toast Casserole, peanut butter & jelly sandwiches are soaked overnight in a custard. Then, baked to perfection in the morning.
Check out this recipe
PB&J French Toast Casserole
Bacon Leek Quiche with Hash Brown Crust
This bacon leek quiche is super satisfying for a delicious family meal. With a hash brown crust, this quiche has all the best breakfast foods
Check out this recipe
Bacon Leek Quiche with Hash Brown Crust
Mountain Breakfast Skillet
This Mountain Breakfast Skillet is easy to make, full of lean protein, naturally gluten-free, and sneaks in extra vegetables without sacrificing flavor.
Check out this recipe
Mountain Breakfast Skillet
Low Carb Breakfast Casserole with Roast Vegetables
This delicious low carb breakfast casserole combines the traditional eggs, sausage, & cheese with roasted broccoli, mushrooms & bell peppers.
Check out this recipe
Low Carb Breakfast Casserole with Roast Vegetables
Fluffy Dairy-free Vegetable Frittata
This dairy-free frittata is packed with veggies and is your clean eating answer to a dairy free and gluten free breakfast, brunch, or easy dinner. Ready in 25 minutes plus lots of ways to customize
Check out this recipe
Fluffy Dairy-free Vegetable Frittata
Eggs Benedict Casserole (Paleo, Gluten Free)
Eggs benedict casserole bring restaurant quality cozy right into your kitchen in a tidy paleo and gluten free package.
Check out this recipe
Eggs Benedict Casserole (Paleo, Gluten Free)
Spicy Keto Breakfast Casserole
Perfect for a crowd and great for meal prep, Spicy Keto Breakfast Casserole brings a zesty twist to a classic baked egg dish.
Check out this recipe
Spicy Keto Breakfast Casserole
Caramelized Onion & Cheddar Quiche
This super delicious caramelized onion quiche is packed with great flavor, sweetness of caramelized onions, sharpness of the cheddar cheese.
Check out this recipe
Caramelized Onion & Cheddar Quiche
Blueberry French Toast Casserole
Blueberry French Toast Casserole made with sourdough bread, plant milk, and honey! Enjoy this breakfast casserole with powdered sugar on top.
Check out this recipe
Blueberry French Toast Casserole
Veggie Breakfast Casserole with Hashbrown Crust (Whole30)
Put this easy Paleo & Whole30 veggie-loaded Breakfast Casserole recipe on your meal plan! The best part is the crispy hashbrown crust!
Check out this recipe
Veggie Breakfast Casserole with Hashbrown Crust (Whole30)
Healthy Apple Crisp (Vegan + Gluten-free)
This Healthy Apple Crisp is simple, easy to make, and great for fall! It’s vegan and gluten-free and can be enjoyed as breakfast or a snack!
Check out this recipe
Healthy Apple Crisp (Vegan + Gluten-free)
Shakshuka with Feta Recipe
Shakshuka with Feta is a Mediterranean breakfast or brunch meal prepared with tomatoes, garlic, peppers, seasoning and poached eggs. This easy one-pot shakshuka recipe includes Feta cheese, adding extra comfort flavors to the dish!
Check out this recipe
Shakshuka with Feta Recipe
Mediterranean Frittata
These scrumptious Mediterranean frittata is packed full of flavor and makes a great addition to your breakfast, lunch, or dinner meal plans.
Check out this recipe
Mediterranean Frittata
Life-changing Bircher Muesli – Healthy Overnight Oats
Bircher Museli is a healthy overnight oats muesli variations that got popular thanks to the Swiss nutritionist Dr. Bircher-Benner. Bircher Museli is a very nutritious breakfast option which you might have seen at hotel breakfast buffets.
Check out this recipe
Life-changing Bircher Muesli - Healthy Overnight Oats
Quick and Easy Keto Shakshuka
This quick and easy Keto Shakshuka combines a spicy, creamy tomato and pepper sauce with poached eggs. This nutritious and hearty low carb dish is just fantastic for breakfast or any meal of the day.
Check out this recipe
Quick and Easy Keto Shakshuka
Easy Vegan Breakfast Casserole (Soy-free, Gluten-free)
It is also known as Vegan Egg Casserole. It is the perfect make-head vegan breakfast recipe with a quick & easy vegan eggy base, vegan sausage and SEVEN different veggies.
Check out this recipe
Easy Vegan Breakfast Casserole (Soy-free, Gluten-free)
Cheesy Vegan Cauliflower Casserole
This veggie-loaded Vegan Cauliflower Casserole is layered with ooey-gooey cheese, topped with buttery breadcrumbs and then baked to perfection.
Check out this recipe
Cheesy Vegan Cauliflower Casserole
Sausage and Leek Mini Quiche (Dairy Free)
These muffin tin quiche are filled with leeks and sausage for a great meal prep breakfast or mother’s day brunch. Dairy free and gluten free options, they’re super easy with pre-made crust!
Check out this recipe
Sausage and Leek Mini Quiche (Dairy Free)
Cream Cheese Egg Bake – Low Carb, Keto, THM S
This is the ultimate easy egg bake recipe. You make one egg mixture & choose your own toppings. It is low carb, gluten & grain free, keto, and THM S.
Check out this recipe
Cream Cheese Egg Bake - Low Carb, Keto, THM S
Cheesy Bacon Potato Frittata
Making breakfast for 6 people can be a daunting task. Cooking all the eggs, frying the bacon, buttering toast, setting the table, sometimes it’s more work than dinner! That’s where frittatas come in.
Check out this recipe
Cheesy Bacon Potato Frittata
Traeger Smoked Breakfast Skillet with Sausage
A scrumptious and savory smoked breakfast skillet with sausage and potatoes that is made on the Traeger grill or any smoker!
Check out this recipe
Traeger Smoked Breakfast Skillet with Sausage
Tofu Scramble Tater Tot Casserole
Tofu Scramble Tater Tot Casserole is the ultimate vegan and gluten-free breakfast or brunch recipe. Perfect make-ahead meal for the family!
Check out this recipe
Tofu Scramble Tater Tot Casserole
Brioche French Toast Casserole
Brioche French Toast Casserole is the perfect recipe to serve for breakfast on Christmas morning. Best of all it can be prepped the night before.
Check out this recipe
Brioche French Toast Casserole
Air Fryer Breakfast Casserole
Air Fryer Breakfast Casserole is healthy and nutritious packed with eggs, veggies and cheese for a fluffy and flavorful breakfast frittata.
Check out this recipe
Air Fryer Breakfast Casserole
Healthy Breakfast Casserole
Healthy Breakfast Casserole with potatoes contains veggies, cheese and meat for a complete breakfast egg bake. Egg casserole no bread needed!
Check out this recipe
Healthy Breakfast Casserole
Italian Egg Bake (Paleo, Whole30)
This Italian Egg Bake is an easy, low carb and healthy breakfast recipe that’s full of colorful veggies and a lot of flavor.
Check out this recipe
Italian Egg Bake (Paleo, Whole30)
Apple Sausage Hash Casserole {keto, paleo, Whole 30}
There’s no better start to wake up in the morning than with a warm breakfast casserole, like this hearty and sweet apple sausage hash casserole recipe!
Check out this recipe
Apple Sausage Hash Casserole {keto, paleo, Whole 30}
Cheesy Gluten Free Hash Brown Casserole
Weekend brunch couldn’t be more perfect – especially with a HEALTHIER homemade cheesy gluten free hash brown casserole!
Check out this recipe
Cheesy Gluten Free Hash Brown Casserole
Easy Homemade Muesli
This Easy Homemade Muesli is a breakfast that’s healthier than granola and packed full of nutrition from nuts, seeds, and dried fruits!
Check out this recipe
Easy Homemade Muesli
Healthy Breakfast Casserole
Healthy Breakfast Casserole with potatoes contains veggies, cheese and meat for a complete breakfast egg bake. Egg casserole no bread needed!
Check out this recipe
Healthy Breakfast Casserole
Sweet Potato Egg Breakfast Casserole
Sweet Potato Egg Breakfast Casserole is fluffy, delicious and a perfect make ahead healthy breakfast to start your day right! Perfect for meal prep breakfast, brunch and holidays.
Check out this recipe
Sweet Potato Egg Breakfast Casserole
Blueberry Banana Baked Oatmeal
A healthy baked oatmeal studded with blueberries and sweetened with ripe bananas. This easy oat breakfast will feed a crowd and is perfect for meal prep.
Check out this recipe
Blueberry Banana Baked Oatmeal
Breakfast Broccoli Bake
This Breakfast Broccoli Bake made with eggs, Provolone, and feta cheese is healthy, filling and delicious way to start your day!
Check out this recipe
Breakfast Broccoli Bake
Easy Blueberry Cinnamon Pancake Casserole
Sweet and fluffy, Blueberry Pancake Casserole is the tastiest breakfast casserole you’ll ever eat! It’s filled with fresh fruits, beautiful cinnamon flavor and HEALTHY, all natural ingredients. It’s refined SUGAR-FREE and made with whole grains. A perfect dish that the whole family will enjoy!
Check out this recipe
Easy Blueberry Cinnamon Pancake Casserole
Easy Fluffy Oven-Baked Omelet Casserole
This fluffy oven-baked omelet casserole is a healthy breakfast idea that my family loves, and it takes less than 15 minutes of prep.
Check out this recipe
Easy Fluffy Oven-Baked Omelet Casserole
Sausage Casserole
This sausage casserole is breakfast sausage cooked with peppers and onions, then combined with hash browns, eggs and cheese and baked.
Check out this recipe
Sausage Casserole
Bacon Mushroom Omelet with Cheese
Homemade recipe for the BEST American omelet. This Bacon Mushroom Omelet with Cheese is so fluffy and airy and packed with protein.
Check out this recipe
Bacon Mushroom Omelet with Cheese
Hashbrown Casserole
This hash brown casserole is a mixture of creamy potatoes with plenty of melted cheese, all baked to golden brown perfection.
Check out this recipe
Hashbrown Casserole
Baked Oatmeal with Blueberries
Make-Ahead Vegan Breakfast: Baked Oatmeal with Blueberries, is an easy, healthy, time-saving, gluten-free breakfast of oatmeal, bananas, and whole lemons.
Check out this recipe
Baked Oatmeal with Blueberries

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